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On the other hand, two portions of the sequence with complementary strands can be aligned, as an illustration of an alternative RNA splicing.
LAST compares two nucleotide sequences, optionally overlapping or not. The results of the LAST alignments are presented in a common display. QUIP can convert LAST alignment into extensive gene region “sequences” (which are searching for similar sequences from the JGI) and copies it into huge FASTA format files, which are then used in ec5d62056f ligign
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